Search results for "Microarray experiment"

showing 5 items of 5 documents

Plaid model for microarray data: an enhancement of the pruning step

2010

Microarrays have become a standard tool for studying gene functions. For example, we can investigate if a subset of genes shows a coherent expression pattern under different conditions. The plaid model, a model-based biclustering method, can be used to incorporate the addiction structure used for the microarray experiment. In this paper we describe an enhancement for the plaid model algorithm based on the theory of the false discovery rate.

False discovery rateStructure (mathematical logic)MicroarrayMicroarray Plaid model pruning step.Microarray analysis techniquesComputer sciencefood and beveragescomputer.software_genreBiclusteringDNA microarray experimentPruning (decision trees)Data miningDNA microarraySettore SECS-S/01 - Statisticacomputer
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Pathway network inference from gene expression data

2014

[EN] Background: The development of high-throughput omics technologies enabled genome-wide measurements of the activity of cellular elements and provides the analytical resources for the progress of the Systems Biology discipline. Analysis and interpretation of gene expression data has evolved from the gene to the pathway and interaction level, i.e. from the detection of differentially expressed genes, to the establishment of gene interaction networks and the identification of enriched functional categories. Still, the understanding of biological systems requires a further level of analysis that addresses the characterization of the interaction between functional modules. Results: We presen…

ESTADISTICA E INVESTIGACION OPERATIVAGene regulatory networkGene ExpressionInferenceSister chromatidsOxidative Phosphorylation//purl.org/becyt/ford/1 [https]Structural BiologyEstadística e Investigación OperativaGene Regulatory NetworksTopology (chemistry)Alzheimers-DiseaseGeneticsDIBUJOBiological systemsApplied MathematicsSystems BiologyCell Cycle//purl.org/becyt/ford/1.2 [https]Computer Science ApplicationsMicroarray experimentsModeling and SimulationIdentification (biology)Functional assessmentDNA-replicationFunctional connectionsGlycolysisCIENCIAS NATURALES Y EXACTASPathway NetworkDNA ReplicationSaccharomyces-CervisiaeBioinformaticsS-phaseSystems biologyGenomicsComputational biologySaccharomyces cerevisiaeBiologyGene interactionAlzheimer DiseaseModelling and SimulationGenomic dataPANAPathwaysMolecular BiologyUbiquitinResearchGene Expression ProfilingR packageGluconeogenesisGene expression profilingComputingMethodologies_PATTERNRECOGNITIONPurinesCiencias de la Computación e InformaciónProteolysisGene expression dataCiencias de la Información y BioinformáticaUbiquitin conjugationPathwayBMC Systems Biology
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MLML2R

2019

R package for maximum likelihood estimation of DNA methylation and hydroxymethylation proportions.

carbohydrates (lipids)organic chemicalsbacteriaheterocyclic compoundsEpigeneticsMicroarray experimentMethylated DNA immunoprecipitation
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MGFM

2017

The package is designed to detect marker genes from Microarray gene expression data sets.

Microarray experimentGene expression
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OSAnalyzer

2018

OSAnalyzer is a software tool able to compute the overall survival (OS) and progression-free survival (PFS) of cancer patients and evaluate their association with ADME gene variants.

Drug metabolismOncologyMicroarray experimentPharmacogenomicsneoplasms
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